Optical mapping of the Fusarium oxysporum f. sp. melongenae genome

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dc.authoridALTINOK, H Handan/0000-0002-4267-1107
dc.authoridTanyolac, Muhammed Bahattin/0000-0002-4368-0988
dc.authorscopusid57188676588
dc.authorscopusid15727377800
dc.authorscopusid6507409829
dc.authorwosidALTINOK, H Handan/HJI-9445-2023
dc.contributor.authorAtes, Duygu
dc.contributor.authorAltinok, Hacer H.
dc.contributor.authorTanyolac, Muhammed Bahattin
dc.date.accessioned2023-01-12T19:49:51Z
dc.date.available2023-01-12T19:49:51Z
dc.date.issued2022
dc.departmentN/A/Departmenten_US
dc.description.abstractOptical mapping approaches are widely preferred and applied in different branches of genomic studies because of their accuracy, low cost, and high efficiency. In the current study, a sequence orientation of the Fusarium oxysporum f. sp. melongenae (FOMG) genome that is deposited in GenBank National Center for Biotechnology Information under accession number MPIL00000000 was used as the reference genome, which we checked with Bionano Genomics optical mapping approaches. The optical mapping produced 103 contigs, the longest of which was 3.05 Mb. The N50 value of optical map contigs is 0.85 Mb. The sequences of the FOMG reference genome and optical map mainly match each other. Results obtained in the current study indicate that optical mapping can be used to construct complete and gapless assemblies of the FOMG genome. It also can be applied to validate a previous genome assembly.en_US
dc.description.sponsorshipScientific and Technological Research Council of Turkey (TUBITAK) [COST-114O866]en_US
dc.description.sponsorshipThe Scientific and Technological Research Council of Turkey (TUBITAK), Grant/Award Number: COST-114O866en_US
dc.identifier.doi10.1002/jobm.202100627
dc.identifier.endpage610en_US
dc.identifier.issn0233-111X
dc.identifier.issn1521-4028
dc.identifier.issue5en_US
dc.identifier.pmid35170765en_US
dc.identifier.scopus2-s2.0-85125393631en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage604en_US
dc.identifier.urihttps://doi.org/10.1002/jobm.202100627
dc.identifier.urihttps://hdl.handle.net/11454/75935
dc.identifier.volume62en_US
dc.identifier.wosWOS:000760885800001en_US
dc.identifier.wosqualityQ3en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.language.isoenen_US
dc.publisherWileyen_US
dc.relation.ispartofJournal of Basic Microbiologyen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectbionanoen_US
dc.subjecteggplanten_US
dc.subjectFusarium oxysporum fen_US
dc.subjectspen_US
dc.subjectmelongenaeen_US
dc.subjectgenome sequencingen_US
dc.subjectoptical mappingen_US
dc.subjectEggplanten_US
dc.subjectTurkeyen_US
dc.subjectDnaen_US
dc.titleOptical mapping of the Fusarium oxysporum f. sp. melongenae genomeen_US
dc.typeArticleen_US

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