Diversity and genetic analysis through DArTseq in common bean (Phaseolus vulgaris L.) germplasm from Turkey

Basit Öğe Kaydı
dc.contributor.authorSeda Nemli
dc.contributor.authorTansel Kaygısız Aşçıoğul
dc.contributor.authorDuygu Ateş
dc.contributor.authorDursun Eşiyok
dc.contributor.authorMuhammed Bahattin Tanyolaç
dc.date.accessioned2019-10-26T19:27:39Z
dc.date.available2019-10-26T19:27:39Z
dc.date.issued2017
dc.departmentEge Üniversitesien_US
dc.description.abstractThe common bean (Phaseolus vulgaris L.) is the most consumed food legume in the world and is a major source of dietary protein, carbohydrates, and valuable micronutrients, especially in developing countries. Diversity Arrays Technology (DArTseq), based on genome reduction with restriction enzymes, provides a rapid, high-throughput, and cost-effective tool capable of generating thousands of genotyped single nucleotide polymorphisms (SNPs) for a genome-wide analysis of genetic diversity. In this study, we aimed to characterize common bean accessions using SNPs detected by a DArTseq approach. A total of 43,018 SNPs were identified from 173 common bean accessions, including Andean and Mesoamerican genotypes. After filtering raw and redundant data, a total of 16,366 SNPs were considered for further analyses. According to population structure analysis, the genotypes were roughly divided into 2 gene pools of Andean and Mesoamerican types. Pairwise fixation index (Fst) values were calculated to resolve the differentiation between populations. This study demonstrated that discovering SNPs from the whole genome is a potential resource for identifying naturally diverse accessions and also the information could be used in breeding programs to develop new common bean varieties.en_US
dc.identifier.endpage404en_US
dc.identifier.issn1300-011X
dc.identifier.issue5en_US
dc.identifier.startpage389en_US
dc.identifier.urihttps://app.trdizin.gov.tr/makale/TWprME9UQTFOUT09
dc.identifier.urihttps://hdl.handle.net/11454/10192
dc.identifier.volume41en_US
dc.indekslendigikaynakTR-Dizinen_US
dc.language.isoenen_US
dc.relation.ispartofTurkish Journal of Agriculture and Forestryen_US
dc.relation.publicationcategoryMakale - Ulusal Hakemli Dergi - Kurum Öğretim Elemanıen_US]
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectZiraaten_US
dc.subjectOrtak Disiplinleren_US
dc.titleDiversity and genetic analysis through DArTseq in common bean (Phaseolus vulgaris L.) germplasm from Turkeyen_US
dc.typeArticleen_US

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