Diversity and genetic analysis through DArTseq in common bean (Phaseolus vulgaris L.) germplasm from Turkey

Basit Öğe Kaydı
dc.contributor.authorNemli, Seda
dc.contributor.authorAsciogul, Tansel Kaygisiz
dc.contributor.authorAtes, Duygu
dc.contributor.authorEsiyok, Dursun
dc.contributor.authorTanyolac, Muhammed Bahattin
dc.date.accessioned2019-10-27T11:19:39Z
dc.date.available2019-10-27T11:19:39Z
dc.date.issued2017
dc.departmentEge Üniversitesien_US
dc.description.abstractThe common bean (Phaseolus vulgaris L.) is the most consumed food legume in the world and is a major source of dietary protein, carbohydrates, and valuable micronutrients, especially in developing countries. Diversity Arrays Technology (DArTseq), based on genome reduction with restriction enzymes, provides a rapid, high-throughput, and cost-effective tool capable of generating thousands of genotyped single nucleotide polymorphisms (SNPs) for a genome-wide analysis of genetic diversity. In this study, we aimed to characterize common bean accessions using SNPs detected by a DArTseq approach. A total of 43,018 SNPs were identified from 173 common bean accessions, including Andean and Mesoamerican genotypes. After filtering raw and redundant data, a total of 16,366 SNPs were considered for further analyses. According to population structure analysis, the genotypes were roughly divided into 2 gene pools of Andean and Mesoamerican types. Pairwise fixation index (Fst) values were calculated to resolve the differentiation between populations. This study demonstrated that discovering SNPs from the whole genome is a potential resource for identifying naturally diverse accessions and also the information could be used in breeding programs to develop new common bean varieties.en_US
dc.description.sponsorshipScientific and Technological Research Council of Turkey (TUBITAK)Turkiye Bilimsel ve Teknolojik Arastirma Kurumu (TUBITAK) [TUBITAK-114O555]en_US
dc.description.sponsorshipThe study was supported by the Scientific and Technological Research Council of Turkey (TUBITAK) with Project No. TUBITAK-114O555. We would like to thank Paul Gepts from the University of California-Davis (USA) for kindly sharing his control group of common bean accessions (Mesoamerican and Andean gene pools).en_US
dc.identifier.doi10.3906/tar-1707-89
dc.identifier.endpage404en_US
dc.identifier.issn1300-011X
dc.identifier.issn1303-6173
dc.identifier.issue5en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage389en_US
dc.identifier.urihttps://doi.org/10.3906/tar-1707-89
dc.identifier.urihttps://hdl.handle.net/11454/32809
dc.identifier.volume41en_US
dc.identifier.wosWOS:000414902800008en_US
dc.identifier.wosqualityQ2en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakTR-Dizinen_US
dc.language.isoenen_US
dc.publisherTubitak Scientific & Technical Research Council Turkeyen_US
dc.relation.ispartofTurkish Journal of Agriculture and Forestryen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectCommon beanen_US
dc.subjectDArTseqen_US
dc.subjectsingle nucleotide polymorphismen_US
dc.subjectpopulation structureen_US
dc.titleDiversity and genetic analysis through DArTseq in common bean (Phaseolus vulgaris L.) germplasm from Turkeyen_US
dc.typeArticleen_US

Dosyalar

Koleksiyon

WoS İndeksli Yayınlar Koleksiyonu
Scopus İndeksli Yayınlar Koleksiyonu
TR-Dizin İndeksli Yayınlar Koleksiyonu