Genome wide association study of genes controlling resistance to Didymella rabiei Pathotype IV through genotyping by sequencing in chickpeas (Cicer arietinum)

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dc.authorscopusid58621596300
dc.authorscopusid57219434306
dc.authorscopusid57188676588
dc.authorscopusid7005079516
dc.authorscopusid6507409829
dc.contributor.authorŞahin, E.S.
dc.contributor.authorTalapov, T.
dc.contributor.authorAteş, D.
dc.contributor.authorCan, C.
dc.contributor.authorTanyolaç, M.B.
dc.date.accessioned2024-08-25T18:36:36Z
dc.date.available2024-08-25T18:36:36Z
dc.date.issued2023
dc.departmentEge Üniversitesien_US
dc.description.abstractAscochyta blight (AB) is a major disease in chickpeas (Cicer arietinum L.) that can cause a yield loss of up to 100%. Chickpea germplasm collections at the center of origin offer great potential to discover novel sources of resistance to pests and diseases. Herein, 189 Cicer arietinum samples were genotyped via genotyping by sequencing. This chickpea collection was phenotyped for resistance to an aggressive Turkish Didymella rabiei Pathotype IV isolate. Genome-wide association studies based on different models revealed 19 single nucleotide polymorphism (SNP) associations on chromosomes 1, 2, 3, 4, 7, and 8. Although eight of these SNPs have been previously reported, to the best of our knowledge, the remaining ten were associated with AB resistance for the first time. The regions identified in this study can be addressed in future studies to reveal the genetic mechanism underlying AB resistance and can also be utilized in chickpea breeding programs to improve AB resistance in new chickpea varieties. © 2023en_US
dc.description.sponsorshipTAGEM/TBAD/A/21/A7/P3/2606; Türkiye Bilimsel ve Teknolojik Araştırma Kurumu, TÜBİTAK: 118O840en_US
dc.description.sponsorshipThis study was funded Ministry of Agriculture and Forestry General Directorate of Agricultural Research and Policies Grant No TAGEM/TBAD/A/21/A7/P3/2606 . The generation of the GBS sequencing data in this project was funded by the Scientific and Technological Research Council of Turkey (TUBITAK) Grant No 118O840 .en_US
dc.identifier.doi10.1016/j.ygeno.2023.110699
dc.identifier.issn0888-7543
dc.identifier.issue5en_US
dc.identifier.pmid37597791en_US
dc.identifier.scopus2-s2.0-85172480915en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.urihttps://doi.org/10.1016/j.ygeno.2023.110699
dc.identifier.urihttps://hdl.handle.net/11454/100691
dc.identifier.volume115en_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.language.isoenen_US
dc.publisherAcademic Press Inc.en_US
dc.relation.ispartofGenomicsen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.snmz20240825_Gen_US
dc.subjectAscochyta blighten_US
dc.subjectCicer arietinumen_US
dc.subjectGenome-wide association studiesen_US
dc.subjectGenotyping by sequencingen_US
dc.subjectPathotype IVen_US
dc.subjectchromosomal mappingen_US
dc.subjectCiceren_US
dc.subjectgeneticsen_US
dc.subjectgenome-wide association studyen_US
dc.subjectgenotypeen_US
dc.subjectplant breedingen_US
dc.subjectplant diseaseen_US
dc.subjectquantitative trait locusen_US
dc.subjectAscochyta rabieien_US
dc.subjectChromosome Mappingen_US
dc.subjectCiceren_US
dc.subjectGenome-Wide Association Studyen_US
dc.subjectGenotypeen_US
dc.subjectPlant Breedingen_US
dc.subjectPlant Diseasesen_US
dc.subjectQuantitative Trait Locien_US
dc.titleGenome wide association study of genes controlling resistance to Didymella rabiei Pathotype IV through genotyping by sequencing in chickpeas (Cicer arietinum)en_US
dc.typeArticleen_US

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