Bacterial metagenome analysis of Mytilus galloprovincialis collected from Istanbul and Izmir coastal stations of Turkey

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dc.contributor.authorBozcal, Elif
dc.contributor.authorDagdeviren, Melih
dc.date.accessioned2020-12-01T12:02:27Z
dc.date.available2020-12-01T12:02:27Z
dc.date.issued2020
dc.departmentEge Üniversitesien_US
dc.description.abstractMytilus galloprovincialis is a marine mollusk belonging to the Bivalvia class. It has been distributed largely in Turkish shores and worldwide aquatic environments. Besides being known as an environmental pollution indicator, it is highly consumed as a food and has a high economic value. Due to their nutritional mechanisms by filtering water, they are affected by pollution in seawater and mussels can host-microbial diversity of environmental origin as well as pathogenic bacteria. Therefore, in this study, bacterial species found in Mediterranean mussels collected from the coastal stations of Istanbul [Rumeli Kavagi (RK), Kucukcekmece (KC)], and Izmir [(Foca (MF), Urla (MU)] were investigated and compared with microbiological and metagenomic analyses. According to microbiological analysis results, 34 mussel-associated Enterobacteriaceae and Vibrionaceae family members were identified. As a result of the culture-independent metagenomic analysis, taxonomic groups for each station were identified and compared based on Operational Taxonomic Unit data. For all stations, the most abundant bacterial genera were the unclassified bacterial genera. the total number of mussel-related total richness identified in all groups was 4889 (RK = 1605; KC = 1930; MF = 1508; and MU = 1125). According to the metagenomic data obtained in this study, different relative amounts of Lachnospiraceae and Bacteroidetes taxa groups were reported for all stations. the pathogenic bacterial genera identified by metagenomic analyses which may be significant for the public health are Arcobacter, Clostridium, Aeromonas, Vibrio, Escherichia_Shigella, Klebsiella, Campylobacter, Helicobacter, Pseudomonas, Morganella, Serratia, Corynebacterium, Enterococcus, Staphylococcus, Yersinia, Mycoplasma, Brucellaceae_unclassified, Pantoea, and Proteus.en_US
dc.description.sponsorshipIstanbul University BAP unit [FBA-2018-30817]en_US
dc.description.sponsorshipThe authors received financial support from Istanbul University BAP unit for the project under FBA-2018-30817 code. Authors used the facilities of BM Labosis (Ankara, Turkey) for Sanger Sequencing. the meta-data analysis and numerical calculations reported in this paper were partially carried out at TUBITAK ULAKBIM, High Performance and Grid Computing Center (TRUBA resources).en_US
dc.identifier.doi10.1007/s10661-020-8129-1en_US
dc.identifier.issn0167-6369
dc.identifier.issn1573-2959
dc.identifier.issue3en_US
dc.identifier.pmid32072329en_US
dc.identifier.scopus2-s2.0-85079592002en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.urihttps://doi.org/10.1007/s10661-020-8129-1
dc.identifier.urihttps://hdl.handle.net/11454/62684
dc.identifier.volume192en_US
dc.identifier.wosWOS:000517314700002en_US
dc.identifier.wosqualityQ3en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.relation.ispartofEnvironmental Monitoring and Assessmenten_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subject16S rRNAen_US
dc.subjectMetagenomeen_US
dc.subjectOperational taxonomic uniten_US
dc.subjectMytilus galloprovincialisen_US
dc.subjectIstanbulen_US
dc.subjectIzmiren_US
dc.titleBacterial metagenome analysis of Mytilus galloprovincialis collected from Istanbul and Izmir coastal stations of Turkeyen_US
dc.typeArticleen_US

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