Molecular characterization of tomato spotted wilt virus (TSWV) and cucumber mosaic virus (CMV) affecting tomato and pepper crops in Izmir Province

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dc.authorscopusid57211296291
dc.authorscopusid16040613900
dc.authorscopusid12240408500
dc.contributor.authorGüneş, N.
dc.contributor.authorPaylan, I.C.
dc.contributor.authorGümüş, M.
dc.date.accessioned2024-08-25T18:38:28Z
dc.date.available2024-08-25T18:38:28Z
dc.date.issued2023
dc.departmentEge Üniversitesien_US
dc.description.abstractObjective: The objective of this study was to investigate tomato spotted wilt virus (TSWV) and cucumber mosaic virus (CMV) infections in tomato and pepper plants showing virus-induced symptoms in vegetable growing districts of İzmir, Turkey. Material and Methods: Surveys were carried out in tomato and pepper plantations in 2019 and 2021, and the incidences of these viruses in the collected leaf samples were determined by RT-PCR. Nucleotide identities and phylogenetic relationships of the TSWV and CMV isolates with other isolates retrieved from the GenBank database were determined. Results: The results of this study showed that tomato plants were infected at the same rate (21.50%) with TSWV and CMV. Out of the tested pepper samples, 64.15% were infected with TSWV and 25.47% with CMV. The results showed that, the identity rate of nucleoprotein region of TSWV isolates from tomato was 99-96% at nucleotide level while the isolates from pepper showed 100-95% identity. On the other hand, the capsid protein gene region of the tomato isolate of CMV had nucleotide identity rate of 98-95% with other isolates in GenBank, while that of its pepper isolates had 100-98% identity. Also, CMV isolates of this study showed close phylogenetic relationship with the CMV isolates of subgroup IB. Conclusion: This study revealed the prevalence of TSWV and CMV in symptomatic tomato and pepper samples in İzmir province and some molecular properties of them. © 2023 The authors.en_US
dc.description.sponsorshipBilimsel Araştırma Projeleri Birimi, İstanbul Teknik Üniversitesi, BAP: FGA-2019-20475en_US
dc.description.sponsorshipEge University Scientific Research Projects Coordination (BAP), Turkey, provided financial support for this study (Project Number: FGA-2019-20475).en_US
dc.identifier.doi10.20289/ZFDERGI.1197925
dc.identifier.endpage79en_US
dc.identifier.issn1018-8851
dc.identifier.issue1en_US
dc.identifier.scopus2-s2.0-85153783942en_US
dc.identifier.scopusqualityN/Aen_US
dc.identifier.startpage67en_US
dc.identifier.urihttps://doi.org/10.20289/ZFDERGI.1197925
dc.identifier.urihttps://hdl.handle.net/11454/101010
dc.identifier.volume60en_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherEge Universitesien_US
dc.relation.ispartofJournal of Agriculture Faculty of Ege Universityen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.snmz20240825_Gen_US
dc.subjectPepperen_US
dc.subjectRT-PCRen_US
dc.subjectsolanaceous cropsen_US
dc.subjecttomatoen_US
dc.subjectvirusen_US
dc.titleMolecular characterization of tomato spotted wilt virus (TSWV) and cucumber mosaic virus (CMV) affecting tomato and pepper crops in Izmir Provinceen_US
dc.title.alternativeİzmir ilinde domates ve biber bitkilerini etkileyen tomato spotted wilt virus (TSWV) ve cucumber mosaic virus (CMV) etmenlerinin moleküler karakterizasyonuen_US
dc.typeArticleen_US

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